Does that oil cooler fit on ok?
There is not so much room between the frame tubes and the front mudguard at full compression as there is on the 1100 frame.
The thing is, one of the reasons the 650 handled better was because the headstock is more compact than its bigger brothers, so on balance if you can get it all to fit ok then you end up with a better bike.
To your advantage the original 650 had a bigger front wheel- but even with your front wheel it's worth a good check to make sure everything misses ok.
My experience was that I needed a small oil cooler- oh and the resultant bike 650/1100 is a brilliant machine.
I had to stretch the back wheel out a bit too (1.5 inch over length), as the 650 swing arm makes the bike a bit wheelie prone. It'll lift the front wheel in first on the throttle only, but its pretty manageable now.
I have also squeezed the original 650 airbox on mine too, this has made the bike run much sweeter. Here's a pic from my 2014 holiday. Excuse the sissy bar and hard luggage frame.... wife prefers the highest comforts of life!

z650/1400 bonneville hybrid.